top of page
achamthopudo

AutoDimer







AutoDimer X64 [April-2022] This software is a utility to screen PCR primers to help determine whether a primer-dimer interaction is present or absent in a DNA sequence and to score potential primer-dimer interactions. The program performs a search for primer-dimer interactions that have an IUPAC/IUB ambiguity code. AutoDimer provides an interface for interactive primer-dimer and primer-hairpin analysis. The results can be saved in a file that can be used for manual examination. The results can also be exported to Microsoft Excel for further analysis. AutoDimer can be used as a free web server or as a stand-alone program (for download) for educational and research purposes. For more information, see the AutoDimer Introduction Page. Alternative Names for AutoDimer include AutoDimer, AutoDimer, AutoDimer Software, daper, daper, and AutoDimer: primer-dimer screening program. AutoDimer was written by Ross Roberts, Ross Roberts. The latest version of AutoDimer is available from Related PPCBio Software AutoDimer is a product developed by PPCBio, Inc. for use with the Bioinformatics Workbench. PPCBio, Inc. developed the Bioinformatics Workbench to provide an integrated platform for analysis of high-throughput data. AutoDimer is a product developed by PPCBio, Inc. for use with the Bioinformatics Workbench. PPCBio, Inc. developed the Bioinformatics Workbench to provide an integrated platform for analysis of high-throughput data. AutoDimer software was developed to rapidly screen previously selected PCR primers for primer-dimer and hairpin interactions in short DNA oligomers. The program determines the presence or absence of primer-dimer and primer-hairpin interactions as well as the locations of these interactions. The primer-dimer interaction results are given in a report file that can be used for manual examination. AutoDimer's output data file and its Excel macro (.xls) file can be loaded directly into Excel for further analysis. Applications Applied to primer dimers and hairpins, AutoDimer can be used to rapidly screen primer-dimer and primer-hairpin interactions for short DNA oligomers. AutoDimer software was developed to rapidly screen previously AutoDimer Crack+ Free License Key Free AutoDimer is an automated software for the screening and design of Primer Extension assays. The program can analyze nucleic acid sequences in an accurate manner using a variety of different algorithms for studying interactions among nucleic acid molecules. Primer-dimer A primer-dimer is a hairpin-like structure formed between two complementary primers. The AutoDimer software makes it possible to screen a large number of potential primer-dimers for a given primer pair. Primer-dimer interaction analysis The first step in primer-dimer analysis is the calculation of the base-pairing probability between the chosen primer pair. The secondary structure of primer-dimers can be analyzed using the free energy of single stranded nucleic acid ( Secondary structure prediction for short nucleic acid sequences: Free Energy of secondary structure of DNA and RNA sequences Method for free energy calculations of RNA secondary structure: Free energy of RNA secondary structure prediction based on RNAfold Hybridization Hybridization of the forward and reverse strands of a DNA oligomer. Hybridization of the complementary strands of a DNA oligomer: Heat denaturation of DNA oligomers Melting temperature calculations for DNA oligomers: The melting temperature of a DNA oligomer is equal to the temperature at which the oligomer dissociates. It can be calculated as the sum of the free energy change caused by thermal-induced dissociation, plus a correction term for free energy change resulting from the stacking interaction between the base pairs. The free energy change caused by thermal-induced dissociation: Thermal-induced dissociation constant: The stacking free energy contribution: Calculations of free energy change due to stacking interaction: PROPERTIES of a DNA oligomer: PROPERTIES of a DNA oligomer is a table with parameters that describe the free energy of the base pairing and base stacking interactions, as well as the base length. It can be used to calculate the melting temperature for a given DNA oligomer. Simulation of melting curves for DNA oligomers: Melting curves: Analytical calculation of melting temperature for DNA oligomers: Melting temperature of DNA oligomers: Analytical calculation of melting temperature for DNA oligomers: Melting temperature of DNA oligomers: Pseudoknot Pseudoknots are compact 3-way junctions found in RNA and DNA molecules, in which two duplexes are linked by a single strand (linker strand) of unpaired bases. Interactions of the linker strand with the duplexes of a pseudoknot: Interactions of the linker strand with the duplexes of a pseudoknot: Pseudoknot interaction analysis: Nucleic acid Design This section includes: Sequence analysis of nucleic acid molecules: 8e68912320 AutoDimer [32|64bit] What's New in the? System Requirements: Minimum: OS: Windows Vista Processor: 1.0 GHz processor Memory: 1 GB Graphics: NVIDIA GeForce GT220/AMD Radeon HD3850/Radeon HD 3870 or higher, 1024MB VRAM, OpenGL 2.0 supported DirectX: Version 9.0 Hard Drive: 2 GB available space Network: Broadband Internet connection Sound: DirectX compatible sound card, volume turned up, 5.1 surround sound Other: Keyboard and mouse Recommended: OS: Windows


Related links:

2 views0 comments

コメント


bottom of page